You have to understand that the first/max results apply on entity level if you select an entity. If you fetch join collection attributes or use an entity graph for collection attributes you change the cardinality of the rows returned by JDBC for each entity i.e. every row for the main entity row is duplicated for every collection element. The effect of that is, that Hibernate can’t do pagination with ROWNUM anymore which is why you are not seeing it in the query. If you remove the fetch join you will see the use of ROWNUM.
Having said that, this is a perfect use case for Blaze-Persistence.
Blaze-Persistence is a query builder on top of JPA which supports many of the advanced DBMS features on top of the JPA model. The pagination support it comes with handles all of the issues you might encounter.
It also has a Spring Data integration, so you can use the same code like you do now, you only have to add the dependency and do the setup: https://persistence.blazebit.com/documentation/entity-view/manual/en_US/index.html#spring-data-setup
Blaze-Persistence has many different strategies for pagination which you can configure. The default strategy is to inline the query for ids into the main query. Something like this:
select u
from User u
left join fetch u.notes
where u.id IN (
select u2.id
from User u2
order by ...
limit ...
)
order by ...
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